PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12171g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 210aa    MW: 24082.9 Da    PI: 7.2899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12171g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-172473255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++kG+r +k +g+Wv+eIr p++   r +++lg++ tae+Aa+a++aa  +l+g
  MA_12171g0010 24 QFKGIRMRK-WGSWVSEIRMPKT---REKIWLGSYKTAEQAARAYDAAVYCLRG 73
                   69*****99.**********965...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-292383IPR001471AP2/ERF domain
PROSITE profilePS5103220.8372481IPR001471AP2/ERF domain
CDDcd000184.45E-262483No hitNo description
SMARTSM003804.7E-312487IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-192483IPR016177DNA-binding domain
PRINTSPR003677.7E-82536IPR001471AP2/ERF domain
PfamPF008471.6E-92573IPR001471AP2/ERF domain
PRINTSPR003677.7E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEKPSREHYS RSSPDEDRGQ SCRQFKGIRM RKWGSWVSEI RMPKTREKIW LGSYKTAEQA  60
ARAYDAAVYC LRGPNAKFNF PDSVYSIPSV SSLTRQQIQV AAAKYALGEI SSTSPSVQNI  120
KNNNHKAREK PASQSQPSLV SETVWPCDSQ QISKAQDLGF WETLFDGNCV LNLEKIPSIE  180
EASVWEFIPT WQEEQQEGYI FSDRTDLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-141981972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1243640.0BT124364.1 Picea sitchensis clone WS0473_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ91e-120D5ADJ9_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-36ERF family protein