PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12174g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30735.3 Da    PI: 7.0643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12174g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18129183256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  MA_12174g0010 129 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTK 183
                    788899***********************************************98 PP
2HD-ZIP_I/II122.81.6e-39129218191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++eveeLr ++
  MA_12174g0010 129 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLQREVEELR-AI 218
                    69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-18115184IPR009057Homeodomain-like
SuperFamilySSF466891.24E-18116186IPR009057Homeodomain-like
PROSITE profilePS5007117.119125185IPR001356Homeobox domain
SMARTSM003894.4E-15127189IPR001356Homeobox domain
CDDcd000861.92E-16128186No hitNo description
PfamPF000468.7E-16129183IPR001356Homeobox domain
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
SMARTSM003401.6E-23185228IPR003106Leucine zipper, homeobox-associated
PfamPF021838.2E-11185218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAVSAGPGIT HSHGSEVGAA QLADTSSSQT AGYLRNFDMN RLPSGTDEEG GGGSSSAVST  60
VSPFLSDIVV RYGEKDNGTW DGEVNERTHY QDQGLYNQNT DSLRNIARNC EEDEGDHVSA  120
GGDGSPPPRK KLRLSKEQSA LLEESFREHH TLNPKQKNAL AKRLNLKSRQ VEVWFQNRRA  180
RTKLKQTEVD CELLKRCCET LTEENRRLQR EVEELRAIKV APPCVIAQDF YMPLPAATLT  240
MCPSCERVGS SIDMKRGALT FAKPSYYLSN LRQPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134930.0BT113493.1 Picea glauca clone GQ03410_M22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974113.21e-82homeobox-leucine zipper protein HOX19
SwissprotA2XE761e-62HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotA2YW033e-62HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD03e-62HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
SwissprotQ8GRL41e-62HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A176VUU41e-79A0A176VUU4_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.13e-78(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-62homeobox from Arabidopsis thaliana