PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_123846g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 230aa MW: 26383.9 Da PI: 9.0599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_123846g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	7.3e-53	14	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL++kv++++l++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+r++ky++g r+nr++ sgyWkatg+dk++++k MA_123846g0010 14 LPPGFRFHPTDEELLIHYLERKVSSSPLPA-SIITEIDLYKHDPWDLPAKACYGEQEWYFFSPRNRKYPNGARPNRSAGSGYWKATGTDKPIVTK 107 79**************************.89***********7777789***********************************9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk+Lvfykgr kg kt+W+mheyrl MA_123846g0010 108 sgntSSQKVGVKKSLVFYKGRPLKGLKTNWIMHEYRL 144 88777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-64	7	169	IPR003441	NAC domain
PROSITE profile	PS51005	60.755	14	169	IPR003441	NAC domain
Pfam	PF02365	6.8E-28	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEEWASHQQV PPQLPPGFRF HPTDEELLIH YLERKVSSSP LPASIITEID LYKHDPWDLP 60 AKACYGEQEW YFFSPRNRKY PNGARPNRSA GSGYWKATGT DKPIVTKSGN TSSQKVGVKK 120 SLVFYKGRPL KGLKTNWIMH EYRLVETMPM KRKGSMRLDD WVLCRIYKKS EGPFMQNLLS 180 QHTSDANAAL SNVQEPHMCQ LPLTENWHWN SEPSACSLPT GNVWSSYDNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-74	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-74	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-74	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-74	14	169	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	6e-74	14	169	17	165	NAC domain-containing protein 19
4dul_B	6e-74	14	169	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115957	1e-160	BT115957.1 Picea glauca clone GQ03709_H02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025712.1	1e-87	PREDICTED: NAC transcription factor 25
Swissprot	Q8GY42	8e-81	NAC25_ARATH; NAC transcription factor 25
Swissprot	Q8H4S4	9e-81	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A482ER90	1e-121	A0A482ER90_9SPER; NAC5 domain protein
STRING	EOY28334	4e-87	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-84	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]