PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_124915g0010

Common Name

WOX8B

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 273aa MW: 29995.6 Da PI: 9.3439

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_124915g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.9	1.2e-16	51	110	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+ +++eq+++Le+ F++ +p +ee++ + ++l ++ + +V++WFqNr+a+ k+ MA_124915g0010 51 SRWHPKPEQIRILEAIFNSgMVNPPREEIKIIRAQLekfgQVGDVNVFYWFQNRKARSKR 110 7***************99************************************97 PP
2	Wus_type_Homeobox	107.5	8.1e-35	49	112	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW P+peQi+iLe++++sG+++P++eei+ i+a+Le++G+++d NVfyWFQNrkaR+++kq MA_124915g0010 49 TNSRWHPKPEQIRILEAIFNSGMVNPPREEIKIIRAQLEKFGQVGDVNVFYWFQNRKARSKRKQ 112 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-8	43	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.05E-12	45	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.333	46	111	IPR001356	Homeobox domain
SMART	SM00389	1.1E-7	48	115	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-14	51	110	IPR001356	Homeobox domain
CDD	cd00086	1.00E-6	52	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MFMKSKSSTS PGNQLPETSN SSAMRLPYFE AGVLSHNYVR EKETSKPKTN SRWHPKPEQI 60 RILEAIFNSG MVNPPREEIK IIRAQLEKFG QVGDVNVFYW FQNRKARSKR KQQLQYAQMS 120 KCGAKGARTT SSTASTSATS TSTSQSKPIT IGNQPRSSSA VPVSSSSGNH YDLQVNQEMS 180 NTQCSNMQAV TTGSNGILNE GGVWEDSISN ADPLISVIIN DIPMEVPKGP INFRALFGDD 240 ALLLHSSGQL VLVNEWGFTL EGLEHGATYF NLS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX411951	0.0	JX411951.1 Picea abies WUSCHEL homeobox protein WOX8B (WOX8B) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R9R8D1	1e-174	R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4697	12	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-32	homeobox-3

Publications ? help Back to Top
Hedman H,Zhu T,von Arnold S,Sohlberg JJ Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns. BMC Plant Biol., 2013. 13: p. 89 [PMID:23758772]