PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_126678g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 820aa    MW: 92433.5 Da    PI: 5.4323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_126678g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-0794116427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G+C  Gd+C+F Hgp
  MA_126678g0010  94 VPCYFFQQ-GFCVKGDKCPFVHGP 116
                     79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.469635IPR000571Zinc finger, CCCH-type
SMARTSM003560.002734IPR000571Zinc finger, CCCH-type
PfamPF156631.3E-12761No hitNo description
PROSITE profilePS501039.463763IPR000571Zinc finger, CCCH-type
SMARTSM003560.73962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-690115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.95790117IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-791116IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-494116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-495115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MDEETQKRNT DCVYFLASPL TCKKGNECEY RHSESARINP RDCWYWLGGN CLNPTCSFRH  60
PPLDGLSGAP SPATVPPSSS TSLPASGTAN KPKVPCYFFQ QGFCVKGDKC PFVHGPFSGA  120
NLTSQKATKL STAITEPQAS GKQEVNETES NTDGKHPSTL SFPKAVQSID PNAVQSSNPM  180
TAKPNNFKAV QSRNPVVAMP NNFKALQSSN PVALQSNNFQ AGHLGNPMTM QSNNVKEAQL  240
QPEVRHVSQS RSQPTYIKAS PHEVEQFLPE IESTRQRVHD ASRNRSRIRP SHPPEDRLQN  300
GLESEDLLGG SSPGFDVLVD DGPDQLSHRE DADYYSKHDM ESGRDAINGR ERNVHNKREL  360
ARTPYFDAEF QYDHGAYEPY KNRGYDRVGR KQPNAFDDRV SERPIVRERR SLSSEDDPER  420
NNMEDLRHRI SKRRRAGGAK VADSPSKRQH VDSRHGEFHR GPRQQDDDRR QQDMYRDQLR  480
QGMNHSSRRL HGRIQVESSG FKREPSDNIE ADHEGKLEKA WSRSSPGRRG SNDHFRSKYR  540
EKERGRMPTD GSISSESRVP RGQAFKNTET RTETINFAGP KTLAQIKQEK NRESSEEPST  600
AQSTEHGSSQ NPSMKSQDKH RQNLPWEERK VRLGKVNYDS SGEHDFQAPK PLSDILKIKR  660
KVVQGNDDNE ENTPTEGQSQ SIQGFNLSRG NVVLPPPEKD VEEGELLAGD SYTSELPTFT  720
PGVDDTEASN DVDALIEDKP SAFSNGAKPV VMDDQEDAIM NEAVHSNEDE DVDHEEYDLE  780
HVEHEENEEW ERNGDDQEDE DYLEDDDDDD FARKLGGIFS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1240750.0BT124075.1 Picea sitchensis clone WS0471_E24 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220