PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_127139g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 151aa MW: 16656.2 Da PI: 8.4955

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_127139g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.9	2.4e-45	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+CakdC++apyfp+++p+kfa vh++FGasnv k+l++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++la MA_127139g0010 14 PCAACKLLRRRCAKDCIFAPYFPSDDPHKFASVHRVFGASNVNKMLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAILKSQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e MA_127139g0010 109 LAQAE 113 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.342	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-44	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MRETISKSSN GMSPCAACKL LRRRCAKDCI FAPYFPSDDP HKFASVHRVF GASNVNKMLQ 60 DLPEEQRGDA VSSMVYEANA RVRDPIYGCV GAISSLQQQV AILKSQLALA QAEIVHLKMR 120 QSQTSLSALF TNTNSKIMMM DEGSSPTHML D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	13	115	10	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	13	115	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107440	0.0	BT107440.1 Picea glauca clone GQ03107_I11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294159.1	1e-72	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	5e-61	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2P6Q8S7	1e-70	A0A2P6Q8S7_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004294159.1	4e-72	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-63	LOB domain-containing protein 4