PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_128658g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 293aa    MW: 32059.1 Da    PI: 6.3016
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_128658g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07549442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e+ e+++ C  ++  lC  C  + H        H++vpl
  MA_128658g0010  5 VQCDVCENAEATFLCCADEAALCSVCDNKVHAAnklaskHQRVPL 49
                    57*****************************66899999999986 PP
2zf-B_box32.12.3e-105596237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                    + +kC+ ++ek   +fC +++ llC++C +++H +       H
  MA_128658g0010 55 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSIH-SlnnlvaaH 96
                    789******************************.434455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-13249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.808249IPR000315B-box-type zinc finger
PfamPF006433.0E-6549IPR000315B-box-type zinc finger
CDDcd000217.88E-8549No hitNo description
SuperFamilySSF578455.26E-54989No hitNo description
SMARTSM003364.9E-1554101IPR000315B-box-type zinc finger
PROSITE profilePS501199.42854101IPR000315B-box-type zinc finger
PfamPF006431.7E-85597IPR000315B-box-type zinc finger
CDDcd000211.27E-957101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKMKVQCDVC ENAEATFLCC ADEAALCSVC DNKVHAANKL ASKHQRVPLI NPSSQSPKCD  60
ICQEKTGYFF CLEDRALLCR QCDVSIHSLN NLVAAHQRFL VTGVKVGLEP SNTISSSTNT  120
FAQSSDATHQ KPQTLKNGPR EVSATSHQGI QKGAGGGGMS RKGTVSEYFS ELLPLLRMDE  180
FLNLPELDNG YSFDEAGSSR ADNSNFVEEW TANSLSMEEV NAENCLAQVP EMPSPPTASG  240
LYWPRRVIQH PKEGKRREDL AIFGIDDASL VPDIGCRSSP PDSPLSKRRR LHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256PKEGKRR
2286290KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6768290.0EF676829.1 Picea sitchensis clone WS02753_P02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625544.11e-80PREDICTED: B-box zinc finger protein 22
TrEMBLB8LM300.0B8LM30_PICSI; Uncharacterized protein
STRINGXP_009625544.14e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-69light-regulated zinc finger protein 1