PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_128969g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 232aa MW: 25182 Da PI: 6.6836

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_128969g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	6	45	22	57
SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 22 nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p +e+++++ ++l ++ e+ V++WFqNr+ k k+ MA_128969g0010 6 MVNPRREDIRRIRAQLeefgEVGEASVFYWFQNRKSKIKR 45 679**********************************997 PP
2	Wus_type_Homeobox	63.5	4.4e-21	1	47	19	65
Wus_type_Homeobox 19 lyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +y+sG+++P +e i+ri+a+Lee+G+++++ VfyWFQNrk++ +++q MA_128969g0010 1 MYDSGMVNPRREDIRRIRAQLEEFGEVGEASVFYWFQNRKSKIKRRQ 47 8*****************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.665	1	46	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-7	6	45	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.03E-7	8	51	IPR009057	Homeodomain-like
CDD	cd00086	0.00683	8	47	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-5	14	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MYDSGMVNPR REDIRRIRAQ LEEFGEVGEA SVFYWFQNRK SKIKRRQRQQ ATLRSKSGTK 60 TGTLSSCSSS TSTTTTSSSV QSKHISALAS SPLNSMHNNI ENQPLSSSAV PVSTFAGHQY 120 DLQVNEEMTN DEMGTNQYSY MQAIGAAATA GDGGVLNEVT GGVQKESIIS ANPLITVFIN 180 GVPTEIPKGP INFRAFFGDD SLLIHSSGKS VSVNEWGYTS ESLEHGAAYL LI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	NRKSKIKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R9R867	2e-78	R9R867_PICAB; WUSCHEL homeobox protein WOX8D

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4697	12	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-16	WUSCHEL related homeobox 11