PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_129591g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 158aa    MW: 17824.7 Da    PI: 7.5101
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_129591g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18969257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql++Le+ ++  n++p+ e+++ +A++l     +   +V++WF+Nr+a+e++
  MA_129591g0010  9 TRRWSPTREQLRILETIYNGgNQTPKPEQIQVIAAELrrhgTVAGINVFYWFKNRKARERR 69
                    58*****************99*******************99*****************97 PP
2Wus_type_Homeobox95.73.8e-31970364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+Pt eQ++iLe++y+ G +tP+ e+iq i+aeL+++G + + NVfyWF+NrkaRer+k
     MA_129591g0010  9 TRRWSPTREQLRILETIYNGGNQTPKPEQIQVIAAELRRHGTVAGINVFYWFKNRKARERRK 70
                       78***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.91E-13472IPR009057Homeodomain-like
PROSITE profilePS5007111.386570IPR001356Homeobox domain
SMARTSM003893.8E-6774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-91070IPR009057Homeodomain-like
PfamPF000466.7E-161069IPR001356Homeobox domain
CDDcd000862.09E-61070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSSIPGRETR RWSPTREQLR ILETIYNGGN QTPKPEQIQV IAAELRRHGT VAGINVFYWF  60
KNRKARERRK TRSILEGHAA ANSSGFSSFQ PNDNFSSRLL NSNGEEDESK FSNCIEVYDF  120
LLNSDAAAAE AGVEVESSLQ TLQLFPPSCN ESIAYRNH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1243520.0BT124352.1 Picea sitchensis clone WS0473_E04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I4KAQ01e-113A0A2I4KAQ0_PICAB; WUSCHEL homeobox protein
TrEMBLD5ADI81e-113D5ADI8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-21WUSCHEL related homeobox 1