PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_130615g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35658.7 Da    PI: 4.5517
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_130615g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-184599256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +k+++++ +q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ vWFqNrRa++k
  MA_130615g0020 45 KKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQIAVWFQNRRARWK 99
                    677799************************************************9 PP
2HD-ZIP_I/II123.21.3e-3945136192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kkrrls +qv++LE++Fe e+kLeperK +la+eLglqprq+avWFqnrRAR+ktkqlE+dy +Lk +y+ lk++ e++++++++L++el+
  MA_130615g0020  45 KKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQIAVWFQNRRARWKTKQLERDYGQLKLNYECLKSNFEAVKHDNQKLTSELN 136
                     59**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-2027102IPR009057Homeodomain-like
SuperFamilySSF466893.14E-2035103IPR009057Homeodomain-like
PROSITE profilePS5007118.28541101IPR001356Homeobox domain
SMARTSM003896.5E-1744105IPR001356Homeobox domain
PfamPF000462.6E-154599IPR001356Homeobox domain
CDDcd000861.63E-1645102No hitNo description
PRINTSPR000319.3E-67281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000319.3E-68197IPR000047Helix-turn-helix motif
PfamPF021832.3E-14101141IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTKMETAEAL KFSIPSPLAG CPGSIHDDDE EEDEEECCAA GQQTKKKRRL SLQQVRSLEK  60
TFEVENKLEP ERKLQLAQEL GLQPRQIAVW FQNRRARWKT KQLERDYGQL KLNYECLKSN  120
FEAVKHDNQK LTSELNYLKE KWEETQKLQS DNTDLSPAKE GNNVSGMVED NPIPDTKSLD  180
RAMVCKQDGD AEIKVTSVAM IFNEKLERSE SESSAIVNEL ADNNNNNSPH SIDSHISTLS  240
LNCYYVPGPP VVSAGDEGLM EALCPRGLIR PKEEQINHHQ DFRADANFVQ EDPACNFFSV  300
DDTTVTLPWW EWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448KKKRR
24449KKKRRL
393101RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187950.0BT118795.1 Picea glauca clone GQ04010_F10 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-42homeobox protein 6