PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_130755g0010
Common NameDAL13
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 24156.7 Da    PI: 9.944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_130755g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27250351
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ien +nrqvtfskRr g+ KKA+ELSvLC+aeva+i+fs+tgkl+ +ss
  MA_130755g0010  2 IENPTNRQVTFSKRRGGLTKKAQELSVLCNAEVALIVFSNTGKLHQWSS 50
                    9**********************************************96 PP
2K-box683e-2365159599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +g  l + ++++l  e++++ ke+e+Lq  +Rh+ Ged++sL+l eL +Le+qLe + +++R +K+++l ++  + q+ke++lq+en+ L+++++
  MA_130755g0010  65 QGLGLMDYQHQQLLFEMRRITKENESLQARLRHMRGEDINSLKLPELFNLEKQLELAGTQVRRRKDHVLDNEKTKRQNKERRLQQENMILQEMVD 159
                     3444888999*********************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-25151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.749152IPR002100Transcription factor, MADS-box
PfamPF003191.8E-25248IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-30284IPR002100Transcription factor, MADS-box
CDDcd002652.19E-36266No hitNo description
PRINTSPR004049.8E-151429IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-152950IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1873158IPR002487Transcription factor, K-box
PROSITE profilePS5129714.73274164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MIENPTNRQV TFSKRRGGLT KKAQELSVLC NAEVALIVFS NTGKLHQWSS SSMKKVLERY  60
QKSEQGLGLM DYQHQQLLFE MRRITKENES LQARLRHMRG EDINSLKLPE LFNLEKQLEL  120
AGTQVRRRKD HVLDNEKTKR QNKERRLQQE NMILQEMVDQ HHGHMEEDNG EINFVLCQPL  180
KRLSTAFPAP LLRLQPNQPN LQDIGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-172601068Myocyte-specific enhancer factor 2A
3mu6_B2e-172601068Myocyte-specific enhancer factor 2A
3mu6_C2e-172601068Myocyte-specific enhancer factor 2A
3mu6_D2e-172601068Myocyte-specific enhancer factor 2A
5f28_A2e-172601169MEF2C
5f28_B2e-172601169MEF2C
5f28_C2e-172601169MEF2C
5f28_D2e-172601169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1585430.0AF158543.1 Picea abies clone DAL13-1 MADS-box transcription factor (DAL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XGJ43e-49GGM13_GNEGN; MADS-box protein GGM13
TrEMBLQ9SED91e-149Q9SED9_PICAB; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.14e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]
  2. Sundstr
    MADS-box genes active in developing pollen cones of Norway spruce (Picea abies) are homologous to the B-class floral homeotic genes in angiosperms.
    Dev. Genet., 1999. 25(3): p. 253-66
    [PMID:10528266]