PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_132936g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37975.9 Da    PI: 4.9971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_132936g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.51.4e-1564116256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +kR   + +q+++Le+ Fe  + +  e++ +LAk+lgL  rq+ vWFqNrRa++k
  MA_132936g0010  64 KKRL--KFSQVKRLEKSFEVANRLEPETKIRLAKELGLRPRQIAVWFQNRRARRK 116
                     4554..4469*******************************************99 PP
2HD-ZIP_I/II111.74.7e-3662150189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     ekk+rl+  qvk LE+sFe  ++Lepe K +la+eLgl+prq+avWFqnrRAR ktkq+Ekd++aLk++ydalk++ + L +e+++L++
  MA_132936g0010  62 EKKKRLKFSQVKRLEKSFEVANRLEPETKIRLAKELGLRPRQIAVWFQNRRARRKTKQVEKDFDALKKEYDALKSKYHILLEENKKLKD 150
                     69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-1661119IPR009057Homeodomain-like
PROSITE profilePS5007115.46762118IPR001356Homeobox domain
CDDcd000861.00E-1563119No hitNo description
SMARTSM003892.2E-1264122IPR001356Homeobox domain
PfamPF000465.8E-1364116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-1666125IPR009057Homeodomain-like
PRINTSPR000316.9E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000316.9E-598114IPR000047Helix-turn-helix motif
PfamPF021831.7E-9118150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MIASHTCAGV QGTASLMRCG CECENARKRS MYQSSYSGAM DLSDYDIGEE VGSDDCLHLV  60
GEKKKRLKFS QVKRLEKSFE VANRLEPETK IRLAKELGLR PRQIAVWFQN RRARRKTKQV  120
EKDFDALKKE YDALKSKYHI LLEENKKLKD KGNCSYLSTN RLDVIGDPND LVCIEAEAPQ  180
NSFNFEIEPK QNSATSVLQP TDFPMELSVK SKICQKCAVP VRDIYPTATK EQEGGGYCSI  240
TSEAASSVFN IESTPSPQFP HNIAAAAANF SPISVVEGSS IGEQIAAGLE TPPAGDELHC  300
LQETLPELDV DQIASINQAE ETCRRLFYGL DEEGPLMLWD Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16273KKKRLKFSQVKR
2110118RRARRKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG41e-145A9NVG4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-39homeobox 3