PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_133946g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 671aa    MW: 75301 Da    PI: 8.0334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_133946g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.11.4e-10330409286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ v aL++  +++  +  rg+l k++W+++++++    g   +  qCk kw  l+k y k+k++++       s++++f+++e
  MA_133946g0010 330 WPNSAVDALLRKFEDLCFNKHRGQLGKKHWDRIAAAVnVICGTDYTGMQCKYKWHRLKKMYNKEKQRNEP------SKWAFFRHVE 409
                     *************************************55679999***********************97......5899*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-12329410No hitNo description
PRINTSPR019111.5E-13570587IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PfamPF031624.0E-21570638IPR004861Protein-tyrosine phosphatase, SIW14-like
SuperFamilySSF527993.14E-12570641IPR029021Protein-tyrosine phosphatase-like
Gene3DG3DSA:3.90.190.101.4E-8572634IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019111.5E-13607620IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019111.5E-13626640IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MASPVSESQR TLQLLEEPPE EKPTSSTSVK TCKHGDNQEP NNNVNNDNKN SNNDCNNSNN  60
KKDPGQPQEN SNQGDPNNVK TVEEKPAVTP SSPVQPQSNQ EEPISNSRAV GSPSEGEHGA  120
QMNGNRRAVQ EGSCSSPPRA QPQEHGKAVG NPKAVHERLM ASSTSSQGNH IVMDPSTCLR  180
SRFPIPAYPT GSGLGPYVSC VDRKEDVVPL RGSNIGRESG SGTLLSREQL RIGQENTSRQ  240
QEPVSIPRAV YERIMSSPFR QGFVQLQDSA SNPRQLQALS EASQQWLRSH VINVDELMQS  300
PNAVRQPGQA NEGKKRKERE VTKVQKEELW PNSAVDALLR KFEDLCFNKH RGQLGKKHWD  360
RIAAAVNVIC GTDYTGMQCK YKWHRLKKMY NKEKQRNEPS KWAFFRHVEH IVQKSSKSPA  420
IQNDLQNDLQ NDLQNDSNEE ECPNDVDTTC DAASNESNHE EPSIQTKSAS PLNAIRDEEK  480
RPKKKRVPLK SFGQRMERSM THLANTVSNI EKTRTAEIKK LLDTQLQIAS MMVQGMRELK  540
QGVGMIGCND LAVSQREFVL QQQEGCNERY VPPSNFAMVD KRVYRSGFPN NKNFPFLETL  600
QLNSIICLCP EPYPEANLEF LRTHGIRLFH IGMERYKVSD HEILLSCNGF EGGTWYYNGS  660
VSKAPRGEMC T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A3e-24571646383At1g05000
1xri_B3e-24571646383At1g05000
2q47_A3e-24571646383Probable tyrosine-protein phosphatase At1g05000
2q47_B3e-24571646383Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1041540.0BT104154.1 Picea glauca clone GQ02807_A04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S3W70.0A0A0C9S3W7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_28300_3083 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-08Trihelix family protein