PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_136551g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 221aa MW: 24522.3 Da PI: 6.0429

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_136551g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.5e-31	73	131	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers+++p+++ itY++eHnh+ MA_136551g0010 73 ADSWAWRKYGQKPIKGSPYPRSYYRCSSSkGCTARKQVERSRTEPSMLMITYTSEHNHP 131 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	30.435	67	133	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	8.0E-32	67	131	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	69	131	IPR003657	WRKY domain
SMART	SM00774	4.7E-38	72	132	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	74	131	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLKSECFGFH SLPDFSSPKR FDSSKQVPGA EPDLSEKQDE ALNNMRTGSK RRKTVQTRVI 60 SVPAGEATSG PPADSWAWRK YGQKPIKGSP YPRSYYRCSS SKGCTARKQV ERSRTEPSML 120 MITYTSEHNH PPAVNNKKLT EAPSHCTNIS RSDPHTDTDM NPAIMESPVM SLLGEAVGGE 180 RADSCISRSE IEEDEEDLFA GLGELPESSV FFFSRGFFDE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-22	58	131	7	77	Disease resistance protein RRS1
5w3x_D	9e-22	58	131	7	77	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103112	0.0	BT103112.1 Picea glauca clone GQ0206_M13 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575074.1	1e-46	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-40	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2R4LUZ4	8e-45	A0A2R4LUZ4_CYMEN; Putative WRKY transcription factor 65
STRING	ERM97637	4e-45	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-28	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]