PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_14798g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 286aa MW: 31893.9 Da PI: 4.6313

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_14798g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	36.6	9.8e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++aded+ +i+ +P l+sk+ elf+ +l r++ + + +t+ s ++++v r ++fdfl +iv + MA_14798g0010 1 MQADEDIGKIAQAVPLLVSKSLELFLQDLCDRTYEITLQRGAKTVSASHLKQCVHRYNVFDFLREIVNK 69 899*************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.01E-19	1	71	IPR009072	Histone-fold
Pfam	PF00808	2.4E-13	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.4E-19	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQADEDIGKI AQAVPLLVSK SLELFLQDLC DRTYEITLQR GAKTVSASHL KQCVHRYNVF 60 DFLREIVNKV PDMGGSDAAT GEERNGGRRR KAQEGDENDS DEDDVKRARM GAHHGSGRGR 120 GRRGRGRGSR GGRNGITVEK FEDEDLDLSS EHSEKQEKAS EIFTDVNTET RETKVAVNLG 180 STPVVRDFDL NMELDESGVV ASMPIQPAVK PEHHPSDVAN VHVAVKEADE LPSDVPSVQH 240 PIKQEEQYPS WSHSEVDNVA IDSMQFHVRS DRIVDQYEDD YDNEDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-15	1	54	21	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT105166	0.0	BT105166.1 Picea glauca clone GQ02819_F02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023896354.1	5e-60	dr1-associated corepressor-like
TrEMBL	A0A0D6R6F9	3e-70	A0A0D6R6F9_ARACU; Uncharacterized protein
STRING	Aquca_014_00934.1	3e-56	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-44	nuclear factor Y, subunit C11