PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_15013g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 224aa MW: 25141.2 Da PI: 5.5481

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_15013g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27.4	7.1e-09	127	164	64	101
NF-YC 64 lhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 l +enkrrtl+ ia+a+ rt fdf vdivprde MA_15013g0020 127 LTDKENKRRTLQNIGIATAIGRTGLFDFPVDIVPRDEF 164 6679*******************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MCSPVEGSDE IPNRGSYPNA SWYDTPVQVG NLRSEELGTW NRRINSNPQY HHDLKWGYDT 60 NPCIAPPIGG PPHPQLASYH QQLQAFWRDQ MRVVEVPNGV FQGMRDVHIE TDLEVMDSYR 120 LNVTDVLTDK ENKRRTLQNI GIATAIGRTG LFDFPVDIVP RDEFKDDGLV ILGAAGVLHF 180 MGSGDNVPSY YYVAQQAPNM TAYVPPTQQM RSKALAHVEG SLRT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT071091	4e-91	BT071091.1 Picea sitchensis clone WS02770_F19 unknown mRNA.
GenBank	BT114834	4e-91	BT114834.1 Picea glauca clone GQ03603_F12 mRNA sequence.
GenBank	EF081848	4e-91	EF081848.1 Picea sitchensis clone WS02715_K12 unknown mRNA.
GenBank	EF678330	4e-91	EF678330.1 Picea sitchensis clone WS02914_P18 unknown mRNA.
GenBank	EU579453	4e-91	EU579453.1 Picea wilsonii HAP5B mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NKR8	1e-60	A9NKR8_PICSI; Uncharacterized protein
TrEMBL	B2LSM2	1e-60	B2LSM2_PICWI; HAP5B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-14	nuclear factor Y, subunit C2