PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_151462g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 124aa    MW: 14024.6 Da    PI: 4.2351
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_151462g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB582.4e-182662185
           NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                    lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e++  
  MA_151462g0010  2 LPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYP 66
                    8999*********************************************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-302115IPR009072Histone-fold
SuperFamilySSF471134.02E-273113IPR009072Histone-fold
PfamPF008082.3E-14452IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MLPPDVRVAR DAQDLLVECC VEFINLISSE SNEVCGREEK RTIAPEHVLR ALEVLGFGDY  60
IEEVYPAYEQ HRLETLDSPK SGRWASGAEM TEEEALAEQQ RMFVEARARM NNGNANPPRQ  120
SDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-30410730133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770040.0EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.18e-79protein Dr1 homolog
RefseqXP_011622414.18e-79protein Dr1 homolog
RefseqXP_020521360.18e-79protein Dr1 homolog
SwissprotP495922e-63NC2B_ARATH; Protein Dr1 homolog
TrEMBLB8LMI45e-85B8LMI4_PICSI; Uncharacterized protein
STRINGERN035793e-78(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.41e-67nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]