PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_152275g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 131aa    MW: 14914.7 Da    PI: 4.3359
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_152275g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB65.31.2e-203731585
           NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                    +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e++  
  MA_152275g0010  3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYP 73
                    89*****************************************************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.22E-302120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.6E-333122IPR009072Histone-fold
PfamPF008084.4E-17359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLISSESNE VCGREEKRTI APEHVLRALE  60
VLGFGDYIEE VYPAYEQHRL ETLDSPKSGR WASGAEMTEE EALAEQQRMF VEARARMNNG  120
NANPPRQSDS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B8e-32311423133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770040.0EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.13e-84protein Dr1 homolog
RefseqXP_011622414.13e-84protein Dr1 homolog
RefseqXP_020521360.13e-84protein Dr1 homolog
SwissprotP495921e-67NC2B_ARATH; Protein Dr1 homolog
TrEMBLB8LMI41e-90B8LMI4_PICSI; Uncharacterized protein
STRINGERN035791e-83(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.48e-72nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]