PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_157774g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 95aa    MW: 10737.1 Da    PI: 9.8115
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_157774g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ da + + ++   +W+++a+++  g++++++k ++
   MA_157774g0010  5 NWTWRQNKQFEDALAVYDKDtadRWDKVASMVD-GKSPEEVKAHY 48
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.73156IPR017884SANT domain
SMARTSM007175.7E-6254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-6458IPR009057Homeodomain-like
SuperFamilySSF466892.82E-12559IPR009057Homeodomain-like
PfamPF002495.1E-6548IPR001005SANT/Myb domain
CDDcd001673.65E-6548No hitNo description
PfamPF014661.1E-43156IPR016072SKP1 component, dimerisation
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAATNWTWRQ NKQFEDALAV YDKDTADRWD KVASMVDGKS PEEVKAHYDI LVEDLERIEA  60
GLVPIPNYKS SDSKIPGSSG RGVTRKRVKV KGKRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-266711176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444178.16e-30PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC18e-30D5ADC1_PICSI; Uncharacterized protein
STRINGPOPTR_0002s03640.15e-28(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-30RAD-like 6