PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_164803g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 175aa    MW: 19952.4 Da    PI: 8.6242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_164803g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-193382255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+Wv+eIr+p++   +kr++lg+++t+++Aa+a++ a+++l+g
  MA_164803g0010 33 IYRGVRRRG-WGKWVSEIREPRK---KKRIWLGSYDTPQMAARAHDVAALCLKG 82
                    69****998.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-143282IPR001471AP2/ERF domain
CDDcd000185.28E-323292No hitNo description
SMARTSM003803.3E-333396IPR001471AP2/ERF domain
PROSITE profilePS5103223.4063390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-313391IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-223391IPR016177DNA-binding domain
PRINTSPR003671.4E-93445IPR001471AP2/ERF domain
PRINTSPR003671.4E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEEKQFAPNS NNMQREKKKR ICTEAEGAGS YPIYRGVRRR GWGKWVSEIR EPRKKKRIWL  60
GSYDTPQMAA RAHDVAALCL KGKAAFLNFP DLVNLFPRPS SLDPCDIQSA AAKAARAFNT  120
ETSSLQSSSF QENVEYHNNC NTLTESLRET DGPDDTENSE LELRLDLWWP SKLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1834951577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13756RRRGWGKWVSEIREPRKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1182671e-166BT118267.1 Picea glauca clone GQ04004_G10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478352.16e-44PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391272e-42TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0D6R4W11e-48A0A0D6R4W1_ARACU; Uncharacterized protein
STRINGXP_010454922.15e-43(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]