PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_173384g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 132aa    MW: 14805 Da    PI: 4.4221
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_173384g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.51.9e-17656150
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50
                    lp GfrFhPtdeel+ +yLk k+++    ++ evi+evd+y++ePwdLp +
  MA_173384g0010  6 LPSGFRFHPTDEELIFNYLKGKLKNGLkASEVEVIPEVDLYRCEPWDLPVH 56
                    699*******************998764555689**************942 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-16356IPR003441NAC domain
PROSITE profilePS5100514.4836132IPR003441NAC domain
PfamPF023657.5E-7751IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
METFALPSGF RFHPTDEELI FNYLKGKLKN GLKASEVEVI PEVDLYRCEP WDLPVHSTEI  60
AVLERGRTCE GDLHGEASCV TGVLCYFGLL ELQSINDVGC MLEGIFYSRR VQIPMPMNCI  120
NYGGDTVMEA HS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1152390.0BT115239.1 Picea glauca clone GQ03612_E09 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1854322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-16NAC domain containing protein 86