PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_174370g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 229aa MW: 27087.2 Da PI: 9.0392

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_174370g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.9	5.4e-18	30	114	2	80
trihelix 2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt +e+l L+ea+++++er rg k ++ +W++v +++ ++ + rs++qC++kw+nl ++ykk++e e++ +++ s + MA_174370g0020 30 WTLEETLILLEAKKQDDERRMRGgdkergKTAELRWKWVENYCFKHECIRSQNQCNDKWDNLLRDYKKVREYENRIIPGQPSYWH 114 ************999999874333333799****************************************98887776664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.503	22	92	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.3E-5	23	94	IPR009057	Homeodomain-like
Pfam	PF13837	9.1E-12	30	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MTDPSSSALV RVESTDTGGE RGREYRKGIW TLEETLILLE AKKQDDERRM RGGDKERGKT 60 AELRWKWVEN YCFKHECIRS QNQCNDKWDN LLRDYKKVRE YENRIIPGQP SYWHLEKHER 120 KERGLPSNLL YQVYEALHEV VDKRYAPRIT HPHSSGEKPS TSLQQHEQQQ QHTSQPNLPQ 180 QQQQQQQQPP PTHQQIPTQQ QQQPASGTFN PLPVQYQMLL FSLRFSSRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960379.1	1e-66	trihelix transcription factor ASR3
Refseq	XP_002967337.1	1e-66	trihelix transcription factor ASR3
TrEMBL	D8QR48	3e-65	D8QR48_SELML; Uncharacterized protein
STRING	EFJ31936	6e-66	(Selaginella moellendorffii)
STRING	EFJ37918	6e-66	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-41	Trihelix family protein