PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_17919g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family M-type_MADS
Protein Properties Length: 149aa    MW: 16705.6 Da    PI: 9.9163
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_17919g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.2e-22941133
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCda 33
                   krienk+nrqvtfskRrng+lKKA+ELSvLCda
  MA_17919g0010  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDA 41
                   79******************************7 PP
2SRF-TF52.85.2e-1743712250
                   HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50
                   KKA+ELSvLCdaeva+iifss+gklye+ 
  MA_17919g0010 43 KKAYELSVLCDAEVALIIFSSRGKLYEFG 71
                   ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.983174IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-34173IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-20141IPR002100Transcription factor, MADS-box
CDDcd002652.24E-35272No hitNo description
PRINTSPR004041.9E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-181041IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-192338IPR002100Transcription factor, MADS-box
PfamPF003194.8E-134270IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-134279IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AVKKAYELSV LCDAEVALII  60
FSSRGKLYEF GSAGYGIEIF GPFSGILCYN IRVGEGCEGA NRGCEVYSVI CLKGNLKLAI  120
TFVHVQKTFK FSPAGVYFEK ISRMRPRCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16174161MEF2C
5f28_B3e-16174161MEF2C
5f28_C3e-16174161MEF2C
5f28_D3e-16174161MEF2C
6byy_A4e-16174161MEF2 CHIMERA
6byy_B4e-16174161MEF2 CHIMERA
6byy_C4e-16174161MEF2 CHIMERA
6byy_D4e-16174161MEF2 CHIMERA
6bz1_A3e-16174161MEF2 CHIMERA
6bz1_B3e-16174161MEF2 CHIMERA
6bz1_C3e-16174161MEF2 CHIMERA
6bz1_D3e-16174161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0839150.0EF083915.1 Picea sitchensis clone WS0291_M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159234.16e-31PREDICTED: MADS-box transcription factor 6
SwissprotQ6EU391e-31MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBLA9NRI72e-89A9NRI7_PICSI; Uncharacterized protein
STRINGORGLA02G0240800.11e-31(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-32AGAMOUS-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li H, et al.
    The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.
    Cell Res., 2010. 20(3): p. 299-313
    [PMID:20038961]
  3. Zhang J,Nallamilli BR,Mujahid H,Peng Z
    OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
    Plant J., 2010. 64(4): p. 604-17
    [PMID:20822505]
  4. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  5. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  6. Yadav SR,Khanday I,Majhi BB,Veluthambi K,Vijayraghavan U
    Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility.
    Plant Cell Physiol., 2011. 52(12): p. 2123-35
    [PMID:22016342]
  7. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  8. Conrad LJ, et al.
    The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
    Plant J., 2014. 80(5): p. 883-94
    [PMID:25279942]
  9. Zhang J, et al.
    Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.
    J. Exp. Bot., 2015. 66(1): p. 99-112
    [PMID:25324400]
  10. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  11. Zhang B, et al.
    A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).
    PLoS Genet., 2016. 12(7): p. e1006152
    [PMID:27367609]