PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1793g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 843aa    MW: 93134.9 Da    PI: 5.8797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1793g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.21.8e-1284788352374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAeavs++++e+a+++L ++ el++p+g+++qR+aayf+eA++arl++s  ++y+ lpp + s  +s++ ++a+++f+ +sP++kfsh+ta
  MA_1793g0010 478 LALLLQCAEAVSADNFEEANTILPQITELSTPYGNSVQRVAAYFAEAMSARLVNSYIGMYSPLPPIHMS--QSQKIVTAFQVFNGISPFVKFSHFTA 572
                   579************************************************************999998..5889999******************* PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp+++iTg+g     s e+le+tg+rL++fA++l++pfef++ va+++ +l++e+L+
  MA_1793g0010 573 NQAIQEAFEREQRVHIIDLDIMQGLQWPGLFHILASRPGGPPHVKITGLGT----SLEALEATGKRLSDFAHTLNLPFEFHP-VAEKVGKLDPERLK 664
                   ***************************************************....9**************************.7************* PP

          GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v++g+alaV++ +  h+l+d ++s ++    +L+l+++lsPkv++vveq+++h ++sFl rf+ea++yysalfdsl a++p++s++r+ vE++ll+r
  MA_1793g0010 665 VNRGDALAVHWLH--HSLYDVTGSDTN----TLRLLQRLSPKVITVVEQDLSH-GGSFLSRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSR 754
                   ************9..999999999999....**********************.789**************************************** PP

          GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ei+n++a  g +r+ + + + +Wr++l++ GFkp++l  +aa+qa lll +++ +gy++ ee+g+l lgWkd  L+++SaWr
  MA_1793g0010 755 EIKNILAVGGPARTGEVK-FDNWRDQLKQTGFKPISLAGNAATQATLLLGMFPCQGYTLMEENGTLKLGWKDLCLLTASAWR 835
                   ************998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.065451815IPR005202Transcription factor GRAS
PfamPF035146.1E-126478835IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAACIAMNTR FRGGDTSGEE IFVGGESDAN NSMINLTSEG EIRRKRTGME LNAPLFRRIN  60
PSESSDYGQI KWNNLSSGLR ESQTPVPLAS PGWQYSSSAT VDGVSHRTTA PSRPGLGLSN  120
SVLSGESNGQ PFNGAYSSVP FFQNSNMERS VSNSCSQWNK WGSVVQPEVG LGCDGTGQQL  180
SSLNAVQAMD EAAAAVWVDS LIKDLMMQSS PNVSMAQIIQ NVQEIVPPYN PHVASVLEYR  240
LRSLGQSELG LAGSTQIGRD QNISMNASSD ARGLKRSIDH SDHHRRDMNA QQQIMVDWKS  300
IGTNPDPARR STRTSQLDDD DHRMLDNIHG RGLDVDDQRL RRGNDDLRLR IHSTESHDIQ  360
REQQPDSALK LYLDSSCYDQ TPWASSKDQF SDTAFMANQS MWVQPRQADN NSQPPVLSLQ  420
HQANEDDALR VAPSNDNYIA MTRKVNTNSN PDPSRNQTPQ EQAPPDITSS DEEGLHLLAL  480
LLQCAEAVSA DNFEEANTIL PQITELSTPY GNSVQRVAAY FAEAMSARLV NSYIGMYSPL  540
PPIHMSQSQK IVTAFQVFNG ISPFVKFSHF TANQAIQEAF EREQRVHIID LDIMQGLQWP  600
GLFHILASRP GGPPHVKITG LGTSLEALEA TGKRLSDFAH TLNLPFEFHP VAEKVGKLDP  660
ERLKVNRGDA LAVHWLHHSL YDVTGSDTNT LRLLQRLSPK VITVVEQDLS HGGSFLSRFV  720
EAIHYYSALF DSLGASYPED SHDRHLVEQQ LLSREIKNIL AVGGPARTGE VKFDNWRDQL  780
KQTGFKPISL AGNAATQATL LLGMFPCQGY TLMEENGTLK LGWKDLCLLT ASAWRPAHHG  840
LIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.047183613380Protein SCARECROW
5b3h_A0.047183612379Protein SCARECROW
5b3h_D0.047183612379Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2643880.0KM264388.1 Pinus radiata SCR (SCR) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090957.10.0protein SCARECROW
TrEMBLA0A0B4U7W60.0A0A0B4U7W6_PINRA; SCR
STRINGcassava4.1_001986m0.0(Manihot esculenta)
STRINGXP_002519983.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein