PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_179641g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 207aa MW: 23744.7 Da PI: 8.6896

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_179641g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.2e-29	112	169	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver+a+d+ +v++tY g+Hnhe MA_179641g0010 112 EDGYKWRKYGKKFVKNSPNPRNYFRCSDNNCGVKKTVERDARDKGIVITTYLGKHNHE 169 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-31	100	171	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-27	103	171	IPR003657	WRKY domain
PROSITE profile	PS50811	29.207	106	171	IPR003657	WRKY domain
SMART	SM00774	6.9E-32	111	170	IPR003657	WRKY domain
Pfam	PF03106	2.1E-23	112	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDPRIGHIQA AAMKFFSKEE TQQIQEANGS QHIGAEPFEP SDFLVSDEEF DHSCRSEHAV 60 EQACYFNTVK SGPSVQTHVP QETISPKKIR KRKADRGVKY AFLTRSETDI LEDGYKWRKY 120 GKKFVKNSPN PRNYFRCSDN NCGVKKTVER DARDKGIVIT TYLGKHNHES PSVIYYTLNP 180 ELLVHLPRQT AGLPLQRFSP VCNYHPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-24	104	172	10	78	Probable WRKY transcription factor 4
2lex_A	6e-24	104	172	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842164.1	5e-39	probable WRKY transcription factor 50
Swissprot	Q93WV4	4e-30	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0D6R4C9	1e-53	A0A0D6R4C9_ARACU; Uncharacterized protein
STRING	ERN03839	2e-38	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-32	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]