PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18042g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 710aa    MW: 75806.4 Da    PI: 8.7817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18042g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11468513555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  MA_18042g0010 468 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 513
                    99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-17461522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.453463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16465522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-13467517No hitNo description
PfamPF000108.6E-9468513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MDVTAGVKID QELDPRSSFS FTPQGRRGKS TTLFQVSKFY KDDQKPAVRP ATEQFAGFNI  60
NGKHQCSAPI ISISAQAASE CKSFKFSKQA AGFESRDCEI IRRGRIPLRL DILASLVNFL  120
VDMQPSTSML GTGPVQGVSS VTACLSSSPQ VGLQEQMHSQ QHQINNQQQH FSSQFDQTNQ  180
PHQNMDDFLE QMLFMPQWSD VAGGKSPWEF NPNNAPQGNN ASNNNNSPQN LQSNTQKLFT  240
MSLMPPGIGS QGLNSQENDG HAGEHMQYSY DQSPFLANRL RQHQLSGNSS INQTPNQVSQ  300
GINETNTSPG RSMVLQLSTG NASASQLLAS MGNSPRGTAV MTRSPSTGGS CNGSDGGMLP  360
LPLSLGQAGK SGDMNEPGSR EEIEASFKSV NNARDSNLGG LFQPFAVSPR GVRPTGQNFH  420
AQPGQVPMQG YGGMPQPQHQ NPPPTGVGAA PPVRPRVRAR RGQATDPHSI AERLRRERIA  480
ERMKALQELV PNSNKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAV APLVADIPAE  540
GANAPQGTRT NGSQNSSPDG LALTERQVAK LMEEDMGTAM QYLQGKGLCL MPISLASAIN  600
NSGSRPQAPS TPSLQGLLAS NVNDRQVLEP SSNSALSALT STSMTIQPSI SSPGSGITEQ  660
GDNAHKAGNG TRNPKDSREA NSVTKSNGIG PALSKNAVKG EDEPQRRTGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472477RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150430.0BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.21e-101transcription factor bHLH66
RefseqXP_011628047.11e-101transcription factor bHLH66
RefseqXP_020530898.11e-101transcription factor bHLH66
RefseqXP_020530899.11e-101transcription factor bHLH66
TrEMBLU5DE191e-100U5DE19_AMBTC; Uncharacterized protein
STRINGERN186531e-101(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-45LJRHL1-like 1