PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_183667g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 244aa    MW: 27925.7 Da    PI: 7.409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_183667g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.2e-131663248
                     SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +WTt Ed +l d+++ +G +  W+++ ++ g++R++k+c++rw +yl
   MA_183667g0010 16 AAWTTKEDMILRDYINIHGLEgGWRSVRNKTGLNRSGKSCRLRWTNYL 63
                     68*****************8899***********************97 PP
2Myb_DNA-binding52.61.1e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w++
   MA_183667g0010  69 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 112
                      7899******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2151063IPR017930Myb domain
SMARTSM007178.6E-101465IPR001005SANT/Myb domain
SuperFamilySSF466899.38E-2614110IPR009057Homeodomain-like
PfamPF002493.1E-111663IPR001005SANT/Myb domain
CDDcd001671.51E-71763No hitNo description
Gene3DG3DSA:1.10.10.601.6E-191770IPR009057Homeodomain-like
PROSITE profilePS5129426.18564118IPR017930Myb domain
SMARTSM007173.3E-1568116IPR001005SANT/Myb domain
PfamPF002499.9E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2471118IPR009057Homeodomain-like
CDDcd001676.63E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGSRRCYRD EGFNRAAWTT KEDMILRDYI NIHGLEGGWR SVRNKTGLNR SGKSCRLRWT  60
NYLRPNIKRG NISTDEEELI IRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTQLRKKIVA  120
LYKRDQIEAK MTEEDRDVSS SFDLVGANAK KIAVNIETNV TDAQSFDEQS RTLLQEDLTM  180
EICSHPHPNM TSLMLEDEEL IFKQNGITSE GVLGLDCAIQ FPLSPISSSI EFQMSCLFST  240
VGYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-211311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186080.0BT118608.1 Picea glauca clone GQ04008_C16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228205.15e-56PREDICTED: transcription factor TT2-like
STRINGXP_008228205.12e-55(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-44MYB family protein