PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_18777g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 256aa MW: 29027.8 Da PI: 7.3632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_18777g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.3e-07	189	230	5	50
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveY 50 h +Er+RR+++ + f+ Lr l+P + +K a++L ++ +Y MA_18777g0020 189 HVVAERKRREQMSDVFSALRALVPVN-----PKnAGRATVLLQTKDY 230 8899********************96.....2335566666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.309	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-13	184	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-13	188	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-8	188	239	No hit	No description
Pfam	PF00010	1.1E-4	189	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-7	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MCSPSSSPKF LLDDIYKTSV EAIDRSKIDD YKGCEHDFID PLTHWQVDSF ESVAADDLCC 60 CLPPTSFNDL ASSDLVLQNQ IGIDNGQLSL QLDESIISVF NEGINSNWTG LGLSFNQKRN 120 SAFVEWKAIN PDSTRSCKRQ KYSSLQKRCI RFLNDINNHR ILRPLGYNNN SGKRSMAVSN 180 NYDKLAIHHV VAERKRREQM SDVFSALRAL VPVNPKNAGR ATVLLQTKDY VIALKKDIQQ 240 LEQRNRELEA LLCQES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	197	ERKRRE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12009	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-10	bHLH family protein