PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_18871g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 351aa MW: 39944.5 Da PI: 8.8663

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_18871g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	77	163	1	81
trihelix 1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt + +l+L++a+ + + +++r+k++ +W+ +s+++++ g+ r+++qC+++w+ + +ykki++ e++ ++++s +++ MA_18871g0020 77 RWTSSDTLVLVNAKLveknmhSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNILPGHVSYWSM 163 8***********9555333334444467899****************************************9*999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.992	70	140	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.5E-6	70	145	IPR009057	Homeodomain-like
Pfam	PF13837	1.8E-10	75	151	No hit	No description
CDD	cd12203	1.42E-17	77	147	No hit	No description
SuperFamily	SSF46689	2.42E-5	109	146	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MLAEPFSEGL CIPPMGPDDP NGVIHKDEIS EQQPNHPMTT VAEVICCLPS SQDPRDVTPH 60 EVRGKRKLSS EHKGRVRWTS SDTLVLVNAK LVEKNMHSAG GAIKRTKSAI EKWRTISAHC 120 HDNGLDRNAT QCRDRWKHIL PDYKKIRHYE RNILPGHVSY WSMTPKERMD KRLPTNYTKE 180 LYDAMNKHFG QKGNDVGDMI IDTSASDHGT FEDCLTPAKN VIMHENSMPE TPLQSPGDTS 240 SDRDKQYPGK KRKAASKSAG IKATLSENNK MIISNLKMAE EGRMKRHEKY CNLFERRMEM 300 DEKYLNHHAM NVQRMINVEE QKVKAQRDLV SALNTIGQAM LKICESLDTK G

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MLAEPFSEGL CIPPMGPDDP NGVIHKDEIS EQQPNHPMTT VAEVICCLPS SQDPRDVTPH  60
EVRGKRKLSS EHKGRVRWTS SDTLVLVNAK LVEKNMHSAG GAIKRTKSAI EKWRTISAHC  120
HDNGLDRNAT QCRDRWKHIL PDYKKIRHYE RNILPGHVSY WSMTPKERMD KRLPTNYTKE  180
LYDAMNKHFG QKGNDVGDMI IDTSASDHGT FEDCLTPAKN VIMHENSMPE TPLQSPGDTS  240
SDRDKQYPGK KRKAASKSAG IKATLSENNK MIISNLKMAE EGRMKRHEKY CNLFERRMEM  300
DEKYLNHHAM NVQRMINVEE QKVKAQRDLV SALNTIGQAM LKICESLDTK G

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676316	0.0	EF676316.1 Picea sitchensis clone WS02731_A17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LKP7	0.0	B8LKP7_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-20	Trihelix family protein