PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_19007g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

M-type_MADS

Protein Properties

Length: 60aa MW: 6853.1 Da PI: 10.746

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_19007g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94	7.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtf+kRr+g+lKKA+ELSvLCdaev ++ifs++gklye++s MA_19007g0010 9 KRIENAISRQVTFCKRRKGLLKKAYELSVLCDAEVGLMIFSQRGKLYEFAS 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.455	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-27	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.05E-36	2	60	No hit	No description
PRINTS	PR00404	3.4E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MGRGKTQTKR IENAISRQVT FCKRRKGLLK KAYELSVLCD AEVGLMIFSQ RGKLYEFASP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	8e-19	1	59	1	59	MEF2C
5f28_B	8e-19	1	59	1	59	MEF2C
5f28_C	8e-19	1	59	1	59	MEF2C
5f28_D	8e-19	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441790.1	2e-28	PREDICTED: MADS-box protein SOC1-like isoform X2
Swissprot	Q38836	3e-28	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	A9NMI5	2e-28	A9NMI5_PICSI; Uncharacterized protein
STRING	XP_010108058.1	4e-28	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	1e-30	MIKC_MADS family protein

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]