PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_1910g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 226aa MW: 25494.2 Da PI: 8.3349

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_1910g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	54	114	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eql++Le++F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ MA_1910g0010 54 KPRWNPKPEQLRILESVFNSgMVNPPRDEIKRIRAQLqefgQVGDANVFYWFQNRKSRTKQ 114 89***************99***********************************996 PP
2	Wus_type_Homeobox	111	6.6e-36	53	116	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQ++iLe++++sG+++P+++ei+ri+a+L+e+G+++d+NVfyWFQNrk+R +q+q MA_1910g0010 53 PKPRWNPKPEQLRILESVFNSGMVNPPRDEIKRIRAQLQEFGQVGDANVFYWFQNRKSRTKQRQ 116 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-8	35	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.608	50	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-13	50	118	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-7	52	119	IPR001356	Homeobox domain
CDD	cd00086	6.99E-7	53	116	No hit	No description
Pfam	PF00046	3.8E-16	54	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009735	Biological Process	response to cytokinin
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010075	Biological Process	regulation of meristem growth
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNPNKHWPSM FKVKPSTSHN QWHETSNSSA ISGERPSYEG STSENEERSP PEPKPRWNPK 60 PEQLRILESV FNSGMVNPPR DEIKRIRAQL QEFGQVGDAN VFYWFQNRKS RTKQRQRHFL 120 SEESSKCSAE KTRTDQSKAI MDIANTTAIS LHNTGESYSS AVPAAPFSAH QEHYRVQMNG 180 EMSNDQCSYM QAVAAAAARG GIYNEGTCTD TARTIFSCLH QNLPLA

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU944670	0.0	GU944670.1 Picea abies putative wuschel homeobox protein WOX8/9 (wox8/9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029121206.1	7e-53	WUSCHEL-related homeobox 9 isoform X1
Refseq	XP_029121207.1	6e-53	WUSCHEL-related homeobox 9 isoform X2
Swissprot	Q6X7J4	2e-44	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	D5LMH9	1e-144	D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
STRING	VIT_10s0003g00560.t01	2e-51	(Vitis vinifera)
STRING	XP_008811551.1	1e-51	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6103	12	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-34	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]