PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_19488g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 154aa MW: 17761.9 Da PI: 5.3173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_19488g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.9	1.3e-29	32	125	2	95
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF Pt+eelv +yLkk veg + l+++ +i+++d+y+++Pw+Lp + +a+e++w+fF++rd+k+ r+nr tksgyWkatg+d++v ++ MA_19488g0020 32 IPGFRFYPTEEELVGFYLKKCVEGGHrLNFDIIIPTLDLYQHDPWELPgLANDAKESQWFFFVPRDNKKC--PRPNRLTKSGYWKATGSDRAVRNE 125 69*******************9995666666***********556566888*****9975..6******************884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.317	31	154	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-29	32	132	IPR003441	NAC domain
Pfam	PF02365	6.6E-15	33	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEEMYGDGEI LGESTVIPGF RFYPTEEEST VIPGFRFYPT EEELVGFYLK KCVEGGHRLN 60 FDIIIPTLDL YQHDPWELPG LANDAKESQW FFFVPRDNKK CPRPNRLTKS GYWKATGSDR 120 AVRNELLLEG HRFRQSSSQR AASVHRSEEN SGVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-21	33	125	19	110	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-21	33	125	19	110	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-21	33	125	19	110	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-21	33	125	19	110	NO APICAL MERISTEM PROTEIN
3swm_A	8e-21	33	125	22	113	NAC domain-containing protein 19
3swm_B	8e-21	33	125	22	113	NAC domain-containing protein 19
3swm_C	8e-21	33	125	22	113	NAC domain-containing protein 19
3swm_D	8e-21	33	125	22	113	NAC domain-containing protein 19
3swp_A	8e-21	33	125	22	113	NAC domain-containing protein 19
3swp_B	8e-21	33	125	22	113	NAC domain-containing protein 19
3swp_C	8e-21	33	125	22	113	NAC domain-containing protein 19
3swp_D	8e-21	33	125	22	113	NAC domain-containing protein 19
4dul_A	7e-21	33	125	19	110	NAC domain-containing protein 19
4dul_B	7e-21	33	125	19	110	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006828987.1	1e-32	NAC domain-containing protein 35
Refseq	XP_009420148.1	4e-32	PREDICTED: NAC domain-containing protein 35-like isoform X1
Refseq	XP_020598401.1	7e-33	NAC domain-containing protein 35-like, partial
Refseq	XP_026406348.1	4e-32	NAC domain-containing protein 35-like
Refseq	XP_028555611.1	6e-33	NAC domain-containing protein 35 isoform X2
Swissprot	Q10S65	9e-31	NAC22_ORYSJ; NAC domain-containing protein 22
Swissprot	Q9ZVP8	1e-30	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A075M5N5	4e-44	A0A075M5N5_9SPER; NAC domain protein
STRING	ERM96403	5e-32	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-32	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]