PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_19523g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 249aa MW: 27728.4 Da PI: 8.4688

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_19523g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	158.8	8.4e-50	63	163	5	102
NF-YC 5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 w++q ie+a df+nh+lPlarikki+k+de+vkmisaeaPv+++kace+fi eltlr+w+h+ee+krrtl+k+diaaa+trtdifdfl+di p MA_19523g0010 63 SWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEHVKMISAEAPVVFAKACEMFINELTLRAWNHTEETKRRTLQKNDIAAAITRTDIFDFLIDILP 158 6998877789************************************************************************************ PP NF-YC 98 rdelk 102 rdelk MA_19523g0010 159 RDELK 163 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.54E-31	65	153	IPR009072	Histone-fold
Pfam	PF00808	1.4E-22	81	144	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.7E-37	82	159	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MPIQYYGATP YQTAQILPSI AHGTFQQPLI SSNAHAAPAL PLSAHLNQLA YHHQKHQGKV 60 EISWANQMQG IEQAVDFRNH SLPLARIKKI MKSDEHVKMI SAEAPVVFAK ACEMFINELT 120 LRAWNHTEET KRRTLQKNDI AAAITRTDIF DFLIDILPRD ELKEDQVITL GTPSSSLSVG 180 GSSSNAGVAN SFPYYYLPNQ HSAPHGVTVG NPMHPAIYMQ QPRSPAAYMQ NMLQRGHMHT 240 DQSRSHNSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-53	67	159	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022075.1	7e-74	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_011022077.1	7e-74	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_021639808.1	9e-74	nuclear transcription factor Y subunit C-2-like
Refseq	XP_021639809.1	9e-74	nuclear transcription factor Y subunit C-2-like
Refseq	XP_021639810.1	9e-74	nuclear transcription factor Y subunit C-2-like
Refseq	XP_021639811.1	9e-74	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9ZVL3	1e-61	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A9NTJ8	1e-113	A9NTJ8_PICSI; Uncharacterized protein
STRING	POPTR_0005s09770.1	3e-72	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-59	nuclear factor Y, subunit C2

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]