 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MA_196213g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 250aa MW: 27816 Da PI: 4.791 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 15.3 | 3.6e-05 | 142 | 165 | 8 | 30 |
HHHHHHHHHHHHHHHHHCTSCC.C CS
HLH 8 rErrRRdriNsafeeLrellPk.a 30
Er+RR ++++ + +Lr+++Pk +
MA_196213g0010 142 TERKRRTKLKETLYKLRSVVPKiS 165
6********************955 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-5 | 131 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.34E-6 | 134 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 9.42 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.64E-4 | 143 | 169 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 250 aa Download sequence Send to blast |
MDFAAFGFDC VTEMCNSNKS EINQYSNGND FGHGFHLPDM SNIGSAGLYE SFSGQASSYS 60 EPKTVESQTD QNPAISVCSE DTAMDHQNSE LWMDMDENSR QLERDDNDPQ IIGSNPSTKT 120 YNSGGPVVQR QQQRQTSKNL YTERKRRTKL KETLYKLRSV VPKISKVDIC NVGEEGIYHV 180 RIESKKEAGG LVKLTRALES LPLHIMNSNI CCFDEAILST VTLNASSMEI GGADKLEDMI 240 RQSISSAWMG |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B8LRN6 | 1e-30 | B8LRN6_PICSI; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP557 | 16 | 78 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G12860.1 | 3e-09 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|