PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_196775g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 228aa    MW: 25942.4 Da    PI: 7.9088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_196775g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-0669911031
                    HHHHHHHHHHHHHHHCTSCC.C. CS
             HLH 10 rrRRdriNsafeeLrellPk.as 31
                    r+RR+++N+a+ +Lr+++Pk + 
  MA_196775g0010 69 RKRRKKLNDALYTLRSVVPKiNK 91
                    9******************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-664104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-46990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDTRLQYAGE ILKSDYYVDQ NNQLWMDNMD EIVAHLDWDG NDLEIMGVSK PAAKTNHLQS  60
ASKNLHSQRK RRKKLNDALY TLRSVVPKIN KVCINSSSLN VIKPMRNPNL EKRSTGSGDA  120
NKSVDNFKHE KVLEGKIVEI FNTGKDGTYH VRIECKKDAG VLVDLTRALE SFPWEIVNSN  180
TCCFHEAIQY TLYVRSLENV GADKLEDMIR RTMTCDYSGE IHSKISAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0836831e-117EF083683.1 Picea sitchensis clone WS02910_B06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT71e-111B8LPT7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.24e-11bHLH family protein