PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2008g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 74aa    MW: 8554.34 Da    PI: 4.2449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2008g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.8e-112667144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     ++ ++++E++l+ ++ ++lG + W++Ia +++ gRt+ ++k + 
     MA_2008g0010 26 KMDFSEDEEDLISRLYNLLGQR-WALIAGRIP-GRTADEIKKYC 67
                     5689*****************9.*********.********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2041874IPR017930Myb domain
SMARTSM007172.1E-62573IPR001005SANT/Myb domain
PfamPF002496.1E-102667IPR001005SANT/Myb domain
SuperFamilySSF466895.15E-82669IPR009057Homeodomain-like
CDDcd001675.49E-72967No hitNo description
Gene3DG3DSA:1.10.10.603.9E-122966IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MSDMDRSSSD DNISVDSHDD VNESYKMDFS EDEEDLISRL YNLLGQRWAL IAGRIPGRTA  60
DEIKKYCSKR YVSD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1013951e-122BT101395.1 Picea glauca clone GQ01303_H24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086360.12e-27MYB-like transcription factor ETC1
TrEMBLA9NLI82e-45A9NLI8_PICSI; Uncharacterized protein
STRINGXP_002529738.13e-26(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.12e-16MYB_related family protein