PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_203641g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GeBP
Protein Properties Length: 424aa    MW: 48246.4 Da    PI: 8.5327
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_203641g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.79.1e-15182280497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk......aksgkepsfskehdqkifels 92 
                     ++ ws +De+++  Gli++ +k gk   ++++ +y++vk  ++ ++++sql +K r  ++Kf+   +k      + +++e +f+++h    +el 
  MA_203641g0010 182 SQHWSPKDELAFFNGLISY-SKGGKAFPSNMTSVYDYVKPMLDKQFNNSQLYNKFRWGRNKFHSITAKievnnySFQKNEYKFENPHHGALYELW 275
                     677****************.677777788***********************************9999776666668999*************** PP

          DUF573  93 kkiWg 97 
                      ++Wg
  MA_203641g0010 276 IQLWG 280
                     ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-16183280IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLSTDYTTDD ADTYSSSSPS EESGDPFTYQ LKAITSSDSD DDSDDESDYP VPPPKTQKIK  60
RQQQKQRSQL PSAFTNRSAC GDEKTADARR KRRRVHGNDG IPERTTKKKI TEGDKAQKQK  120
FTGIASTSKE EEAPTIGAEA AGAFKRKKIA VENVTTSKDT KKAQKQNVNL AETLNTPSSK  180
ASQHWSPKDE LAFFNGLISY SKGGKAFPSN MTSVYDYVKP MLDKQFNNSQ LYNKFRWGRN  240
KFHSITAKIE VNNYSFQKNE YKFENPHHGA LYELWIQLWG EKDKGGNAHV NHVKHANIVS  300
VDHNGEKKKH AREKKKHVEA EACNASLDCK GKKKNHFEVE EEDTHKIISE EEQNRQEEDR  360
EDVPKSKETS LSKRKAGEVQ ISREMYNLFC EERDAALNEL KNVVQKIFND TNSEIKAMLE  420
GHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993RKRRR
29094KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6766060.0EF676606.1 Picea sitchensis clone WS02744_D06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLG80.0B8LLG8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9800912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.19e-08DNA-binding storekeeper protein-related transcriptional regulator