PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20468g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 243aa    MW: 28003.4 Da    PI: 7.5222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20468g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.7e-29142199259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYG+K vk+s++pr+YYrC+ ++C vkk ver+a+d+ +v++ Y g+Hnhe
  MA_20468g0010 142 EDGYKWRKYGKKFVKNSPNPRNYYRCSDSNCDVKKTVERDAHDKGIVITSYLGRHNHE 199
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-30129201IPR003657WRKY domain
SuperFamilySSF1182901.96E-26133201IPR003657WRKY domain
PROSITE profilePS5081129.7136201IPR003657WRKY domain
SMARTSM007744.6E-31141200IPR003657WRKY domain
PfamPF031061.2E-22142199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MANLVPTIGD FQAAFKVFRK EQAQQLQEAN CSQHMNEKAE AFEPSDFLDL EEDFNHSCKN  60
EDADDQAYNF NIVKTGPSIR REYADSFPSN PPCIRGLHLD HNSTVIQTHP QETMTPKKSR  120
KRKAERALKY AFLTRSETDI LEDGYKWRKY GKKFVKNSPN PRNYYRCSDS NCDVKKTVER  180
DAHDKGIVIT SYLGRHNHES PCVVYYIGKP ETLQLPCRPT ASPILQHISP VCSYVPESFE  240
QHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22134201774WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C91e-51A0A0D6R4C9_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-30WRKY DNA-binding protein 51