PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20596g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 134aa    MW: 14613.1 Da    PI: 7.9586
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20596g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.2e-166197135
           GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C +Cgt +  Tp++Rrgp g++tLCnaCGl ++ kg+
  MA_20596g0010 61 CLHCGTGErsTPMMRRGPVGPRTLCNACGLVWANKGV 97
                   99****9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.32855111IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-1255108IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-1357111No hitNo description
CDDcd002028.53E-1360103No hitNo description
Gene3DG3DSA:3.30.50.106.8E-1660102IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.6E-146197IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MIPSVWYQTG PTWLSRMQRN KGQFTSYKAD SKDLISAGHK WDPSEGGWTP NTNGTQQEAV  60
CLHCGTGERS TPMMRRGPVG PRTLCNACGL VWANKGVLRD LSKSTTSLGS QEQSQSSHEQ  120
NDGGPGSQET ERGE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1238030.0BT123803.1 Picea sitchensis clone WS04717_I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758961.19e-35GATA transcription factor 24
SwissprotQ8H1G01e-32GAT28_ARATH; GATA transcription factor 28
TrEMBLD5AC321e-81D5AC32_PICSI; Uncharacterized protein
STRINGXP_006427761.11e-32(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-35ZIM-LIKE 2