PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_2101g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 477aa MW: 51704.3 Da PI: 6.7642

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_2101g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.2	4.3e-36	142	212	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +kk++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as++ MA_2101g0010 142 KKKSSCKDRHTKVDGRGRRIRMPATCAARIFQLTKELGHKSDGETIQWLLQQAEPSIMAATGTGTIPASAA 212 699999***********************************************************999665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-31	146	253	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.879	147	201	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MANLLTSGYT SIFIVSFGVT LQAAAIFVYK TLLGVQTSGF LCFYISIIQQ AFVIVYSCLR 60 VYPADETEQR DNSYGADTEQ GLRGSTESYV KAMHAAMDAE RIALGSSSMA IAEDLETISG 120 TPIPSSSTGS DLQGTNQQGI VKKKSSCKDR HTKVDGRGRR IRMPATCAAR IFQLTKELGH 180 KSDGETIQWL LQQAEPSIMA ATGTGTIPAS AAAMAGSIGE SGNVLTDSPH GLLGLTVRVC 240 GGDMIMDHLE RRSLMQGARG HEVGRFQNEG FVDQGLEMRR LSDQGLEMRR LREEKGIQLG 300 HMQQNAELSE RRLGVLSAAS RHFSMQESPS EGLSQIWTDS SMYRMTPVPP PPASAASIQA 360 GSRNLTCSNP MTPLTTYMLP SAMNRMPGIN LSGLELQSGH MGHMPLSAML QQQQQGSHPE 420 HHLLGVQAGE GQIGIIASSS AYNNSVRSIT EDYLHHHHHL HYPHAASGQD NSYDQNQ

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MANLLTSGYT SIFIVSFGVT LQAAAIFVYK TLLGVQTSGF LCFYISIIQQ AFVIVYSCLR  60
VYPADETEQR DNSYGADTEQ GLRGSTESYV KAMHAAMDAE RIALGSSSMA IAEDLETISG  120
TPIPSSSTGS DLQGTNQQGI VKKKSSCKDR HTKVDGRGRR IRMPATCAAR IFQLTKELGH  180
KSDGETIQWL LQQAEPSIMA ATGTGTIPAS AAAMAGSIGE SGNVLTDSPH GLLGLTVRVC  240
GGDMIMDHLE RRSLMQGARG HEVGRFQNEG FVDQGLEMRR LSDQGLEMRR LREEKGIQLG  300
HMQQNAELSE RRLGVLSAAS RHFSMQESPS EGLSQIWTDS SMYRMTPVPP PPASAASIQA  360
GSRNLTCSNP MTPLTTYMLP SAMNRMPGIN LSGLELQSGH MGHMPLSAML QQQQQGSHPE  420
HHLLGVQAGE GQIGIIASSS AYNNSVRSIT EDYLHHHHHL HYPHAASGQD NSYDQNQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-39	TCP family protein