PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_211093g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 148aa    MW: 16691.1 Da    PI: 9.9089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_211093g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00151841123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    y C+ Cg + s + +Lk Hi + H
  MA_211093g0010 18 YCCKTCGITRSKRVLLKLHIISsH 41
                    88******************9888 PP
2zf-C2H220.81e-066788223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +Cp Cg sF+ + +Lk+H  +H
  MA_211093g0010 67 VCPECGVSFNKPAHLKQHKLSH 88
                    8*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355161841IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.76E-66290No hitNo description
Gene3DG3DSA:3.30.160.603.4E-86590IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
SMARTSM003550.046688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1156693IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MATEEEKGSK RPKDLRRYCC KTCGITRSKR VLLKLHIISS HGREALENDE RFASKAEGQS  60
QRRSPCVCPE CGVSFNKPAH LKQHKLSHTG QFFSAGGSHP NSTVVREGRV ISTRWGDPLR  120
SSFCLLLAHA SSLLYIFSCN YREHLFAQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1096511e-83BT109651.1 Picea glauca clone GQ03211_B12 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.27e-15transcription factor IIIA