PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_214240g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 227aa    MW: 26416.5 Da    PI: 4.752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_214240g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-083786255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    r++   +E+ RR+r+N+   +L++llP  +     +K +     e+A++YI++L+
  MA_214240g0010 37 RESQTVAEQLRRKRMNHLSTQLKSLLPAtP-----PKIDRCGLYEEAINYIRKLE 86
                    788899**********************55.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-113399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.9633585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-113697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-73790No hitNo description
PfamPF000101.1E-53786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-64191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MHSIKRSSEF DLDTQDSDDL QEIVWRDVDQ MNKITTRESQ TVAEQLRRKR MNHLSTQLKS  60
LLPATPPKID RCGLYEEAIN YIRKLEEDLH QLQRRRDHLL AIQSGQTANE NIDHKVTVEI  120
YDREAIISIT SQRKPRYMWR ILEELETHGL DVETSQLFTG ESFVLLYFHV NFRDDISQDP  180
VQIQTSLEYC FAVMALAHNC HASTAADYCH FTSSLSDGVV ISEDDEE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6777930.0EF677793.1 Picea sitchensis clone WS02775_B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPL51e-118B8LPL5_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548