PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_216909g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 202aa    MW: 23186 Da    PI: 4.3557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_216909g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-151821694
                    EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    +vlpkk ae++   + ++e+++l +ed   ++ W++k++y  ++ks++yv++ ++ eFvk ++L+ gDf++F+ d+ +++++ v
  MA_216909g0010  1 MVLPKKEAEANlpILTEREGMQLCMEDmYLSKNWNFKYRYwpNNKSRMYVME-NTGEFVKTHRLRLGDFIMFYKDE-RNEKYIV 82
                    79***********788899********8888*********888888889988.********************544.4444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-16180IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-6188IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-21186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461188IPR003340B3 DNA binding domain
PfamPF023628.4E-12183IPR003340B3 DNA binding domain
CDDcd100173.91E-20186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVLPKKEAEA NLPILTEREG MQLCMEDMYL SKNWNFKYRY WPNNKSRMYV MENTGEFVKT  60
HRLRLGDFIM FYKDERNEKY IVRAKKVMSE LMITSGNSVD QAMITSSNSV DQTGTYSSPT  120
LIEERSNQQS TSDKENEVSC ESPYGSGNSV SIDDTKMALV TVEDIFSKEF NIEFPPDIAD  180
SVHLESIPSF GSDEISLEDF IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-3119020109B3 domain-containing transcription factor FUS3
6j9b_D2e-3119020109B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-32B3 family protein