PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_232394g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GeBP
Protein Properties Length: 329aa    MW: 37330.3 Da    PI: 9.5479
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_232394g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57348.81.9e-1576171497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgk....epsfskehdqkifelsk 93 
                      + ws eDei++   l+ ++ + g   + d+ afye+vk+ i +++++ +ql +K+r ++ +f   ++k k+g+    +++ ++ h+   f++ k
  MA_232394g0010  76 PQTWSAEDEISFVNTLLACAGEGG---QVDTAAFYEQVKETIALNITRnTQLYDKMRTMRSRFWSIQSKLKEGNipedQFAYRSLHEAALFKVWK 167
                     578****************77777...67****************98626*******************7776422116678899********** PP

          DUF573  94 kiWg 97 
                     +iWg
  MA_232394g0010 168 QIWG 171
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-1777171IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRNRGKDQLT PTAAKRSKPS TGSGKKSQNN VEELVAQTYA KGISILHQKH KDDDARGSKS  60
KKKKKAGKSS VQTKIPQTWS AEDEISFVNT LLACAGEGGQ VDTAAFYEQV KETIALNITR  120
NTQLYDKMRT MRSRFWSIQS KLKEGNIPED QFAYRSLHEA ALFKVWKQIW GNDVEKRDEE  180
EDGDNKDQLP SQNNGNFVRD ENHRANESRV PVMENMTEEV QSKVETLIDS LIRRISTATN  240
LPPFSPGFGA EIGTGSCLCS NLSRRMKELI EAVRSVKEFP GLGAVEAQAL RQKWRNHRLE  300
ELRVFCRSLE LLQEECALCL KELEKRKVK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0866270.0EF086627.1 Picea sitchensis clone WS02913_K03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NZ240.0A9NZ24_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-10DNA-binding storekeeper protein-related transcriptional regulator