PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_238039g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 327aa    MW: 37093.5 Da    PI: 4.7749
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_238039g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1987140356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq++ Le+ Fe+++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  MA_238039g0010  87 KKRRLSVEQVRSLEKSFEMENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWK 140
                     456899***********************************************9 PP
2HD-ZIP_I/II128.13.8e-4186177192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+ y+aLk+ ++++ +e+e+L++ev++L+++l+
  MA_238039g0010  86 EKKRRLSVEQVRSLEKSFEMENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWKTKQLEHVYDALKQDFETVLAEKEKLKAEVAQLTAKLE 177
                     69**************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2071144IPR009057Homeodomain-like
PROSITE profilePS5007117.76782142IPR001356Homeobox domain
SMARTSM003895.7E-1885146IPR001356Homeobox domain
CDDcd000861.67E-1787143No hitNo description
PfamPF000461.1E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-2089149IPR009057Homeodomain-like
PRINTSPR000316.0E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000316.0E-6122138IPR000047Helix-turn-helix motif
PfamPF021832.2E-8143176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRPCLDPNNF MLMQATEGGG GSGTDALLTV LNSCPLPSLR GLQDGSRMSN NIGKRPFYGM  60
FDCYQDDMEE KNMAEFGNPI SNLQLEKKRR LSVEQVRSLE KSFEMENKLE PERKMQLAQQ  120
LGLQPRQVAV WFQNRRARWK TKQLEHVYDA LKQDFETVLA EKEKLKAEVA QLTAKLETYT  180
KNGITGNGLG LNKIKADSSE QEEYVKTNVD RAVAEPSHSL SEVEKPVQAE SCMQDEVSKK  240
IKDFSGSSDT STENGDTRSS QAAYTDEPSL VRLPETSHGK SMNAMYNEQE INQIKLKYDD  300
GEEEFYIGNS YINMLRFDDS FNSVPWC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XP192e-43A0A2R6XP19_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-41HD-ZIP family protein