PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_239753g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 251aa    MW: 27974.7 Da    PI: 10.0377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_239753g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-1368117455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++++Er+RR+++++ f+ Lr+ lP  +     +K s  + ++ Av+YI +Lq
  MA_239753g0010  68 NAKIIERKRRREMKTLFSALRSFLPDeN---LRGKRSVTDQVQAAVNYILHLQ 117
                     789***********************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.73864116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1366131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1168132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-968119No hitNo description
SMARTSM003531.8E-570122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNFPSGSHSA SPAHVPQGFV DRNPATPTGH HNLLSNPYSM ATICTSSPPG HGQSRNRLTG  60
AVPSGKPNAK IIERKRRREM KTLFSALRSF LPDENLRGKR SVTDQVQAAV NYILHLQQKM  120
EDLSTERDKL KAIAKSERIS NVSLDGEQFS CNQIICKYPL FRGSDGDQFP AVEIKSVGSG  180
VQVSTKTFEH QILYSDLLQA LEEAGLQVLS ATRFAINNNR VFHTIHSKVH DLNAFKIETL  240
NEKLWHFIRT G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1101930.0BT110193.1 Picea glauca clone GQ03217_N16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH54e-57B8LNH5_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.13e-18bHLH family protein