PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_254136g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 99aa    MW: 10882.9 Da    PI: 7.6035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_254136g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.24.9e-102063344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT +  +l+ +a   + ++   +W+ +a+++g g+t+ ++k ++
   MA_254136g0010 20 NWTSQQNKLFEKALSIYDKDtpdRWHNVASMVG-GKTPQEVKKHY 63
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.5461671IPR017884SANT domain
SuperFamilySSF466891.57E-121667IPR009057Homeodomain-like
SMARTSM007174.5E-91769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-41970IPR009057Homeodomain-like
CDDcd001674.76E-82067No hitNo description
PfamPF002491.6E-72063IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASKLASSSG SHSSSNTATN WTSQQNKLFE KALSIYDKDT PDRWHNVASM VGGKTPQEVK  60
KHYEILLEDL DCIEAGQVPF PNYKSSSANN GERSGASRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-331389379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099338e-78BT109933.1 Picea glauca clone GQ03213_O06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021680636.11e-37protein RADIALIS-like 3
SwissprotQ1A1735e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC15e-41D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010254824.17e-35(Nelumbo nucifera)
STRINGXP_010088931.15e-35(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-34RAD-like 6