PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_257886g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 223aa    MW: 26123.8 Da    PI: 7.821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_257886g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.6e-0770114755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +E+ RR+r++    +L +llP++     +Kl+     e+A++YI++L+
  MA_257886g0010  70 VAEQLRRKRMKYLCTQLESLLPTP----PPKLDRCGLYEEATNYIRKLE 114
                     68*********************7....39****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.01163113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-966128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-566118No hitNo description
SuperFamilySSF474596.02E-1067125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-669119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALHCLFSYS RPSDLNSQQC TRQVDSQVSP SRKRPFESDS DSQECFDLQE IVWRDVDRMK  60
KVTSGESQVV AEQLRRKRMK YLCTQLESLL PTPPPKLDRC GLYEEATNYI RKLEEDLHQL  120
KRKRDGLMAI QSEKGTNEKI DLKVAMEIYG REAIISFTSQ RRPRYMWRIL EELEKHGLDV  180
ETSQLFTGAS FVLLNFHVNF RENVSHDPAQ IQSSLECRLK LTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-107A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-07bHLH family protein