PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_26114g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 333aa    MW: 36624.1 Da    PI: 7.8731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_26114g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.3e-15160206455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  MA_26114g0010 160 VHNLSEKRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 206
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-20153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-20153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.885156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-16159210No hitNo description
PfamPF000104.9E-13160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAHKCLEPSF LVHNPVLWDD EDALNRNYNY NYYTDLWGGL PLSSSVATTA RTSAEDSRPE  60
VVAVSEALES DYGRLNNNNN NNVSADTQLS CETAATSSSG GSMSSPSNGN KVIKSSKKKV  120
LMGTKDIECQ SQKAQEDSGE NFKQCSTGTS SSKRSRAAEV HNLSEKRRRN RINEKMKALQ  180
NLIPNSNKTD KASMLDEAIE YLKKLQLQVQ MLSARSGIDI SSMRWLAQMP HLQIQQMPKA  240
CMTTDQHAGV SISMPVGSGL MNTNQGSEKR PLPLHDLYIS GALGNTAIPI NLPSARIDDH  300
QSCKMDRPQG HFTLPQLPTT TQEVHSALSL QEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0843860.0EF084386.1 Picea sitchensis clone WS0272_M05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292767.12e-43transcription factor bHLH23
TrEMBLA9NSU40.0A9NSU4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-33phytochrome interacting factor 3