PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_265741g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 86aa    MW: 9387.65 Da    PI: 11.0571
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_265741g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.82.3e-0535543756
                    CTS-HHHHHHHHHHHHHHHH CS
        Homeobox 37 lgLterqVkvWFqNrRakek 56
                    + ++ +qV +WFqNrR  +k
  MA_265741g0010 35 ILVQWKQVWTWFQNRRHAQK 54
                    377889**********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.973156IPR001356Homeobox domain
SuperFamilySSF466894.71E-81157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-41256IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MEKFLEDGKG AVPPRDTISS LAEKFSAAPE RAGKILVQWK QVWTWFQNRR HAQKAKGTKV  60
PGNTAPSPRD DSGAKRVVTN SAAVPS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1057051e-140BT105705.1 Picea glauca clone GQ02826_K03 mRNA sequence.
GenBankBT1239131e-140BT123913.1 Picea sitchensis clone WS04718_K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.19e-23PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.19e-23PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275171.17e-23PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
RefseqXP_017416725.13e-23PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_018854520.14e-23PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
TrEMBLD5ACD82e-54D5ACD8_PICSI; Uncharacterized protein
STRINGXP_010275166.14e-22(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-21sequence-specific DNA binding transcription factors;sequence-specific DNA binding